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Albert Cardona"F-BIAS: Towards a distributed national core facility for Bioimage Analysis", Ambroset et al. 2024 – with Jean-Yves Tinevez at Pasteur....where they share their experience in establishing a distributed, nationwide core-facility providing bioimage analysis services to the french scientific community, with the support of France-BioImaging.<a href="https://arxiv.org/abs/2409.15009" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://arxiv.org/abs/2409.15009</a><a href="https://mathstodon.xyz/tags/imaging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imaging</a> <a href="https://mathstodon.xyz/tags/ScientificFacilities" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ScientificFacilities</a> <a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a>

Albert CardonaImage registration for light-microscopy at petabyte scale, an update of the <a href="https://mathstodon.xyz/tags/BigSticher" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BigSticher</a> for <a href="https://mathstodon.xyz/tags/FijiSc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#FijiSc</a> by <a href="https://qoto.org/@preibischs" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@preibischs</a><a href="https://github.com/JaneliaSciComp/BigStitcher-Spark" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/JaneliaSciComp/BigStitcher-Spark</a>Ready for expansion microscopy <a href="https://mathstodon.xyz/tags/ExM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ExM</a> approaches to mapping neural circuits and more.<a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a>

Albert CardonaFrom Jan Funke:How can machine learning help you to analyze your microscopy images?Find out at the "Deep Learning for Microscopy Image Analysis" course at the <a href="https://mathstodon.xyz/tags/MBL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MBL</a> in Woods Hole from Aug 21-Sep 5!Applications are due April 17.<a href="https://www.mbl.edu/education/advanced-research-training-courses/course-offerings/dlmbl-deep-learning-microscopy-image-analysis" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.mbl.edu/education/advanced-research-training-courses/course-offerings/dlmbl-deep-learning-microscopy-image-analysis</a>Directed by Jan Funke, Anna Kreshuk and Shalin Mehta, and including Carsen Stringer <a href="https://neuromatch.social/@computingnature" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@computingnature</a>, Florian Jug <a href="https://mastodon.online/@florianjug" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@florianjug</a>, Martin Weigert, <a href="https://mastodon.social/@martinweigert" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@martinweigert</a>, Virginie Uhlmann <a href="https://mstdn.science/@vuhlmann" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@vuhlmann</a>, Alexander Krull, Loïc A. Royer as faculty. <a href="https://mathstodon.xyz/tags/SummerSchool" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#SummerSchool</a> <a href="https://mathstodon.xyz/tags/academia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#academia</a> <a href="https://mathstodon.xyz/tags/WoodsHole" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#WoodsHole</a> <a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a>

Albert Cardona"I would have never thought moving away from a 10yr old JDK could be this smooth!" – Tiago Ferreira, author of the SNT plugin for neuronal tracing among others.Curtis Rueden pushing forward the release of <a href="https://mathstodon.xyz/tags/FijiSc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#FijiSc</a> with <a href="https://mathstodon.xyz/tags/Java21" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Java21</a> – a huge upgrade from the decade-old java 8 that Fiji uses today.Testers are reporting success even in new MacOS chipsets.<a href="https://forum.image.sc/t/jaunch-a-new-java-launcher-test-fiji-with-java-21/92058/1" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://forum.image.sc/t/jaunch-a-new-java-launcher-test-fiji-with-java-21/92058/1</a><a href="https://mathstodon.xyz/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProcessing</a> <a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a>

Albert CardonaFrom Oliver Burri via <a href="https://mathstodon.xyz/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> mailing list:SwitZerland’s Image and Data Analysis School <a href="https://mathstodon.xyz/tags/ZIDAS2024" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ZIDAS2024</a>At ETH Zurich from June 23th (Yes, Sunday!) to June 28th 2024.Are you a life scientist working with microscopy images? Do you feel like you could use a nudge in the right direction in order to dive into quantitative image analysis ? Want to learn to program in ImageJ macro language, use novel deep learning tools, discover best practices in image processing all while working on your own data?The program will focus on hands-on work using the best open source tools available to the BioImage Analysis community.Registration is open until 2024-03-16.<a href="https://2024.zidas.org" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://2024.zidas.org</a> <a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a> <a href="https://mathstodon.xyz/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProcessing</a>

Albert CardonaFrom <a href="https://mastodon.online/@florianjug" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@florianjug</a>:<a href="https://mathstodon.xyz/tags/I2K" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#I2K</a> (From Images to Knowledge), the conference where bioimage methods research meets research software engineering meets biology, will welcome you at <a href="https://mathstodon.xyz/tags/HumanTechnopole" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#HumanTechnopole</a> in Milan from Oct. 23rd to 25th, 2024.Influence the agenda here: <a href="https://docs.google.com/forms/d/e/1FAIpQLSczofxTVbESY60L9eoxEdQxfI7xxpejuphucyfgJpF_pIxdsw/viewform" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://docs.google.com/forms/d/e/1FAIpQLSczofxTVbESY60L9eoxEdQxfI7xxpejuphucyfgJpF_pIxdsw/viewform</a><a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a> <a href="https://mathstodon.xyz/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProcessing</a>

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